findIndependencePartition
                        Find independence partition.
hmmClass-class          Class for hiddenMarkovModels.
investigateMergedHMMs   Find density based clusters
localDecodingEntopie    Calculate Local decoding entropies.
mergeHMM                Merging a hidden Markov model.
mergeHMM-package        Investigate the dependence structure of an
                        hidden Markov model
mleHMM                  Estimating (restricted) HMMs.
reduceHMM               Reducing a hidden Markov model.
reduceTpm               Reducing dependence information of a Markov
                        chain.
setHMM                  Setting a hidden Markov model.
show-methods            Output of HMMs on console.
simulateHMM             Simulate a dataset.
stat_distr              Calculating the stationary distribution of a MC
viterbiHMM              Viterbi algorithm for normal-mixture HMMs.
