Merging states of hidden Markov models.

Documentation for package ‘mergeHMM’ version 1.0

mergeHMM-package	Investigate the dependence structure of an hidden Markov model
findIndependencePartition	Find independence partition.
hmmClass-class	Class for hiddenMarkovModels.
hmmClassMvNormal-class	Class for hiddenMarkovModels.
hmmClassNormal-class	Class for hiddenMarkovModels.
investigateMergedHMMs	Find density based clusters
localDecodingEntopie	Calculate Local decoding entropies.
mergeHMM	Merging a hidden Markov model.
mleHMM	Estimating (restricted) HMMs.
reduceHMM	Reducing a hidden Markov model.
reduceTpm	Reducing dependence information of a Markov chain.
setHMM	Setting a hidden Markov model.
show	Output of HMMs on console.
show-method	Output of HMMs on console.
show-methods	Output of HMMs on console.
simulateHMM	Simulate a dataset.
stat_distr	Calculating the stationary distribution of a MC
viterbiHMM	Viterbi algorithm for normal-mixture HMMs.