Main content

German original

Algorithms in Bioinformatics
(dt. Algorithmische Bioinformatik)

Level, degree of commitment in original study programme Advanced module, compulsory elective module
Forms of teaching and learning,
workload
Lecture (2 SWS), recitation class (2 SWS),
180 hours (60 h attendance, 120 h private study)
Credit points,
formal requirements
6 CP
Translation missing. German original:
Studienleistung: Erreichen von mindestens 50 Prozent der Punkte aus den wöchentlich zu bearbeitenden Übungsaufgaben und mündliche Präsentation der Lösung von mindestens zwei der Übungsaufgaben.
Prüfungsleistung: Klausur oder mündliche Prüfung
Language,
Grading
German,
The grading is done with 0 to 15 points according to the examination regulations for study course M.Sc. Computer Sciences.
Original study programme M.Sc. Informatik / Vertiefungsbereich Informatik
Duration,
frequency
One semester,
Regelmäßig alle 2 Semester
Person in charge of the module's outline Prof. Dr. Alfred Ultsch

Contents

  • Biological basics
  • DNA analysis and gene detection
  • Microarray techniques and analysis
  • Visualization and dimension reduction
  • Genes Ontologies
  • overrepresentation analysis
  • Micro-RNAs and their functions
  • Knowledge discovery in biological knowledge bases

Qualification Goals

The students shall

  • understand basic questions and goals in bioinformatics,
  • know the basic concepts of DNA and protein modelling,
  • acquire knowledge of the algorithmic basics of bioinformatic applications,
  • understand and apply methods of knowledge discovery in biological databases,
  • practice scientific working methods (recognizing, formulating, solving problems, training the ability to abstract),
  • practice oral communication skills in the exercises by practicing free speech in front of an audience.

Prerequisites

Translation is missing. Here is the German original:

Keine. Empfohlen werden Grundkenntnisse im Umfang des Moduls Einführung in die Informatik. Biologische Grundlagen werden rekapituliert, entsprechende Vorkenntnisse daher nicht vorausgesetzt.


Recommended Reading

  • - J. Xiong. Essential Bioinformatics. Cambridge University Press, 2006.
  • - W. W. Cohen. A Computer Scientist’s Guide to Cell Biology. Springer-Verlag, 2007.
  • - N. Cristianini, M.W. Hahn. Introduction to Computational Genomics – A case studies approach. Cambridge press, 2007.
  • - F. J. Burkowski. Structural Bioinformatics – An algorithmic approach. Chapman & Hall, CRC, 2009..



Please note:

This page describes a module according to the latest valid module guide in Wintersemester 2018/19. Most rules valid for a module are not covered by the examination regulations and can therefore be updated on a semesterly basis. The following versions are available in the online module guide:

The module guide contains all modules, independent of the current event offer. Please compare the current course catalogue in Marvin.

The information in this online module guide was created automatically. Legally binding is only the information in the examination regulations (Prüfungsordnung). If you notice any discrepancies or errors, we would be grateful for any advice.